Thursday, November 27, 2008

EHS database analysis tool: Nanomaterials

ICON has created an analyzing tool that allows the researcher to analyze research trends across time and by category in a rich content of ICON's database of citations to peer-reviewed publications addressing nanomaterials' environmental, health and safety impacts.

Andrew Maynard did a thorough study of the tool and found it to be practical and provides an insight into how new knowledge on nanomaterial safety is progressing.

Intl Council of Nanotechnology; http://icon.rice.edu/
http://2020science.org/2008/11/23/toxic-particles-and-trivial-pursuits/

Monday, November 24, 2008

Bodleian launches appeal to save the mauscript of Erismena

"If the Bodleian can raise the funds to buy it now, the acquisition would mean the music manuscript returning home to Oxford."




The Bodleian Library is appealing to the public to help raise £85,000 by 6 January 2009, so it can conserve the manuscript of Erismena – the earliest surviving score of an opera in the English language.

Written by Pietro Francesco Cavalli (1602-1676), the leading Italian opera composer of the mid 17th century, Erismena dates from the 1670s – 30 years before any other Italian operas were performed in Britain.

The manuscript has been part of a private collection, and has been studied by only a small number of scholars in the past 50 years. It is one of the most significant British 17th-century music manuscripts to have appeared in recent decades.

In August 2008, the Reviewing Committee on the Export of Works of Art and Cultural Goods placed an export bar on Erismena’s sale to an institutional buyer abroad. This was because of the manuscript’s ‘outstanding significance for the study of the history of music in the UK’. This may be the only opportunity for a British institution to acquire this vital part of musical and British history.

During recent research, Dr Harry Johnstone, retired Music Faculty lecturer at the University of Oxford discovered that Erismena was sold in 1797 at the auction of the library of William and Philip Hayes, who had been successive Professors of Music at the University of Oxford.

If the Bodleian can raise the funds to buy it now, the acquisition would mean the music manuscript returning home to Oxford. If acquired, this precious manuscript would sit alongside the earliest and finest manuscript of Purcell’s Dido and Aeneas, along with an unparalleled range of English 17th- and 18th-century opera and theatre music.

This appeal has been adopted as a key component of Oxford Thinking: The Campaign for the University of Oxford, launched in May to raise a minimum of £1.25bn. The Bodleian, the world-renowned research library of the University, is seeking new funding to build its historic collections, and make them more accessible to students, researchers and scholars globally.

Eric Clarke, Heather Professor of Music, University of Oxford said: ‘The Erismena manuscript is a unique link in the history of operatic influence between Italy and England. The substantial manuscript is rare in being complete, and is of great historical significance in an area of research in which the University of Oxford has an international reputation. I give my full support for this appeal and I hope we will be able to save the manuscript for the future generations of researchers.’

Emma Kirkby, DBE, Honorary Doctor of Music, University of Oxford, said: ‘I am tremendously excited to hear that an entire Cavalli opera manuscript has survived - in an English translation, decades before Handel came to this country, and that there is a chance for the Bodleian Library to acquire this landmark of our musical history. I earnestly hope the means can be found to achieve this.’

Those wishing to support the Library in securing this important manuscript can go to the Erismena Manuscript Appeal website.

http://www.giving.ox.ac.uk/libraries/erismena_appeal/erismena.html

http://www.campaign.ox.ac.uk/news/news/erismena.html

Saturday, November 22, 2008

Nothing so small to escape Hooke's inquiry

...and by the help of Microscopes, there is nothing so small as to escape our inquiry; hence there is a new visible World discovered to the understanding.

The truth is, the Science of Nature has been already too long made only a work of the Brain and the Fancy: It is now high time that it should return to the plainness and soundness of Observations on material and obvious things. It is said of great Empires, That the best way to preserve them from decay, is to bring them back to the first Principles, and Arts, on which they did begin. The same is undoubtedly true in Philosophy, that by wandring far away into invisible Notions, has almost quite destroy'd it self, and it can never be recovered, or continued, but by returning into the same sensible paths, in which it did at first proceed.

Robert Hooke, (1635-1703) Preface to Micrographia








“Risk is an inevitable partner of innovation and regulation is a major means by which we manage the utilitarian trade-off!” Thus we need to continuously measure up relative damages and benefits in all risk claims against present technologies in use!



A key issue in understanding the system of innovation in nanomaterials is that the great majority of nanomaterials are not consumer products to be sold to an end user, but ‘capital’ materials to be used by other industries in order to make new products. In this sense most nanomaterials can be understood as ‘products for process innovation’. This is why supplier and manufacturing firms occupy the central position in nanoma-terials innovation systems. The innovation system for nanomaterials can therefore be conceptualised as an ‘hourglass model’ (figure 2-VI) in which a variety of scientific disciplines support the development of a number of technologies for the fabrication of nanomaterials, which then serve many different economic sectors.

Novel Materials in the Environment: the case of nanotechnology, Royal Commission on Envir Pollution, Nov 2008



Learning outcomes

* A knowledge of the sources, both natural and man-made, and categorisation of nanoparticles
* An understanding of the importance of agglomeration and the settling of particles
* An understanding of the effects of nanoparticles on the respiratory tract
* An understanding of the environmental considerations that must be addressed when considering a new product and its life cycle
* An understanding of the roles, types and processes of regulation
* A knowledge of the current regulatory landscapes in the UK, Europe and the US

Small particles have a large surface area/unit mass.
The surface may be very chemically reactive or catalytic.
Properties change as the particle size is reduced.
The mechanism of uptake of particles by the body is relatively unknown.




Traces of metals in volcanic nanoparticles = Dr Tamsin Mather & Dr David Pyle, Department of Earth Sciences, Oxford, lead a multiaspects new research on volcanic nanoparticles, and appearances of trace metals such as mercury close to the source. They are working on how to link nanoparticles to the source! Thus nanoparticles entering eco-systems or sea waters are under scrutiny!





"Peroxidases (enzymes that catalyse oxidation reactions) are important in the treatment of waste water for oxidizing organic substances. Whereas iron oxide nanoparticles have typically been linked with horseradish peroxidase (a natural catalyst) to perform immunoassays that use peroxidase-sensitive dyes, the recent finding suggests that the nanoparticles can essentially be “self-sufficient” catalysts. The study ruled out the possibility that the catalytic properties come from iron ions that have leached out of the nanoparticle. The group's results add to a growing list of nanomaterials possessing catalytic properties that are absent in the bulk."

Manuel Perez J, 2007, Iron oxide nanoparticles: Hidden talent, Nature Nanotechnology 2, 535-536




Irregularities


- One Swiss study discovered that up to 6% percent by weight of the particles entered the sewage works effluent – while they had the concentration at a very high point, and assumed concentration is lower in real time scenarios, and concluded that agglomeration will be further reduced? (1)
(1) Stark WJ. Removal of Oxide Nanoparticles in a Model Wastewater Treatment Plant: Influence of Agglomeration and Surfactants on Clearing Efficiency. Environ. Sci. Technol., 2008

- The prospective cohort study reported by Bates et al reiterated the message that adverse reactions to drugs are common, and identified 247 adverse drug "events" in a study population of 4031 admissions (6.1%). (2)

- the CDC compiles rates of risk from disease vs. risk from vaccination: Pneumonia: 6 in 100
http://www.cdc.gov/vaccines/vac-gen/6mishome.htm#Diseaseshadalready

- The electronic structure, equation of state and phase stability of platinum aluminides and magnesium-lithium alloys are being predicted using first principles density functional theory.(3)
(3)First principle studies of intermetallics, 2006
H.R. Chauke*, M. Phasha*, Professor P.E. Ngoepe*, Dr. R. Drautz, Dr. D. Nguyen Manh**, Professor D.G. Pettifor

- Density Functional tight binding (DFTB) methods are being used to calculate the potential energy surface (PES) and to identify energetically preferred substitutional sites for the inclusion of experimentally relevant impurities and defects. In addition to this the affect of the surface, edge and corner impurities on the distribution of charge is also under investigation; as is the shape dependence of the distribution of charge in undoped diamond nanoparticles of different sizes. (4)
(4) Location and Coordination of Impurities and Defects in Nanocrystalline Diamond, Dr. M. Sternberg*, Dr. A.S. Barnard http://www.materials.ox.ac.uk/uploads/file/research/RIP2006.pdf

Thursday, November 20, 2008

Nanoscale solid catalyst for glycerol

The first chemical industrial application of glycerol was developed by Alfred Nobel, who reported in 1860 the transformation of glycerol to nitroglycerin, which gave access later to dynamite. Then, during the 20th century, chemists started to progressively find new applications of glycerol especially in the pharmaceutical and cosmetic industries, where it was used for its emollient, demulcent, and humectant properties. Later, glycerol was also used as a plasticizer in the polymer industry and as a moistening agent or solvent in the food industry. Then, rapidly nearly every industry used glycerol, making this natural polyol one of the most valuable alcohols

Glycerol is the main co-product of the vegetable oils industry (especially biodiesel). With the rapid development of oleochemistry, the production of glycerol is rapidly increasing and chemists are trying to find new applications of glycerol to encourage a better industrial development of vegetable oils. In this Review, attention is focused on the selective use of glycerol as a safe organic building block for organic chemistry. An overview is given of the different heterogeneous catalytic routes developed by chemists for the successful and environmentally friendly use of glycerol in sustainable organic chemistry. In particular, the effects of different catalyst structural parameters are discussed to clearly highlight how catalysis can help organic chemists to overcome the drawbacks stemming from the use of glycerol as a safe organic building block. It is shown that heterogeneous catalysis offers efficient routes for bypassing the traditional use of highly toxic and expensive epichlorohydrin, 3-chloro-1,2-propanediol, or glycidol, which are usually used as a glyceryl donor in organic chemistry.

To maintain the environmental benefit of using glycerol as a sustainable organic building block, heterogeneous catalysis was often preferred to homogeneous catalysis. Indeed, heterogeneous catalysis offers many advantages such as easy removal of solid catalysts from the reaction media and, in some cases, their possible recycling. However, from a scientific point of view, it is well established that the activities of solid catalysts are usually lower than those of homogeneous catalysts mainly because of the poorer accessibility of the grafted catalytic sites. This aspect is even more complex when catalytic processes are carried out in glycerol, as, with organic substrates, the reaction media becomes biphasic raising some problems of substrate diffusion. The rapid development of materials chemistry recently has given access to a wide range of different elaborate solid catalyst structures, usually well-defined at a nanoscale, and now offers to chemists a means to improve the performance, activity and selectivity of solid catalysts. On the basis of these fascinating studies, researchers started to design new solid catalysts, which were found particularly efficient for the successful use of glycerol as organic building block.

http://www3.interscience.wiley.com/cgi-bin/fulltext/120755747/HTMLSTART
14a A. Zecchina, E. Groppo, S. Bordiga, Chem. Eur. J. 2007, 13, 2440
14b J. Grunes, J. Zhu, G. A. Somorjai, Chem. Commun. 2003, 9, 2257
14c A. T. Bell, Science 2003, 299, 1688.

Nanotoxicology: a definition

Another illustration of the scope of current research activity (and hence of future published material) can be obtained from the recently released National Nanotechnology Initiative report from the Nanotechnology Environmental & Health Implications (NEHI) working group (NNI, 2008). Although this report covers only US based research, the general trends presented in the review are relevant also to current European research activity.

Nanotoxicology can be defined as the study of the interactions of nanoparticles with biological systems with an emphasis on establishing the relationship, if any, between the physical and chemical properties of nanoparticles and the induction of toxicological responses. The term ‘nanoparticle’ is used here to refer to free nanoparticles that are present in air or suspended in liquid (Hansen et al.,2007’s suggested Category IIIb-d), but does not include those bound to surfaces, suspended in solids, or components of structured surfaces, films, etc, for which toxicology data is mostly lacking. This may be an important gap in deriving risks related to the lifetime usage of a product, e.g. the adherence to and leaching of MNPs from material surfaces.

There is a correspondingly large and rapidly expanding published literature on the toxicology of manufactured nanoparticles (MNPs) that deserves a few words of overview.

Depending on the particular combinations(s) of keywords used, the relevant current literature relating to MNP toxicology consists of between 400 and 800 papers, the vast majority of which concern the cytotoxic effects of MNPs in cell culture systems, mostly mammalian.

A commendable percentage of the multi million dollar US budget is devoted to improved instrumentation and analytical technologies for characterising particles and for studying their interactions with biological materials and the consequences for human health. An extremely small percentage of funding effort is devoted to environmentally realistic exposure assessment and risk management protocols. A similar conclusion has been reached by Grieger et al., (2007), who note the majority of ecotoxicology-relevant publications to be in the areas of regulation, characterisation of nanoparticles and testing (not always together), with a complete absence of exposure assessment. This emphasises that when reviewing the literature relating to proposed mechanisms of cellular uptake and pathways of toxicity, it is also necessary to consider what types of exposure would lead to these effects in real world situations.

An accompanying review (S. Holgate, 2008) provides an excellent overview of the literature relevant to mechanisms of toxicity of MNPs in mammalian systems and in particular in relation to lung and inhalation toxicology.

http://www.rcep.org.uk/novel%20materials/Literature%20Review_Ecotoxicology%20of%20Nanomaterials.pdf




The behaviour of manufactured NPs in environmental matrices such as natural waters, sediments or soils

There is now a wider debate about the risks and benefits of the many manufactured NMs and consumer products (Royal Society 2004; US EPA 2005; Owen and Depledge 2005; Handy and Shaw 2007; Owen and Handy 2007)

Clearly, the scientific debate on the environmental safety of NMs needs to adopt a multi-disciplinary approach involving physicists, chemists, material scientists, biologists, toxicologists, risk assessors, regulators and policy makers. There was a seminar, which took place in Museum of Science in London where for the first time gathered diverse people from chemistry, biology, and risk assessment issues together in one volume.

Nanoparticles are no new phenomena, being a natural product of sea waves, volcanic eruption, etc. If we consider atmospheric dust alone, estimates indicate about one billion metric tons per year are produced globally (Kellogg andGriffin 2006). There is also incidental production of NPs from human activity (e.g.,wear of car tyres, urban air pollution) that may also present a toxicological risk (reviewed in Handy and Shaw 2007). Their effects on human, however, depend on their shape, size, surface energy, and chemistry. Their behaviour in agglomeration, or other properties such as the attractive-repulsive properties of the particles in collision and its frequencies, and also their colloidal environment is important as medium to define further interactions, and agglomeration. After an initial collision, particles may remain in aqueous phase as single particles, or form particle–particle, particle–cluster and cluster–cluster aggregates. The forces involved in the collisions include Borne repulsion, diffuse double layer potential, and van der Waals attraction. These are the cause for particles attachment to the walls of equipments, and aggregation in natural waters, or more often on the organisms which may have toxicological implications regarding fate and behaviour of the materials, and the types of ecosystems and organisms exposed. Nanoparticles themselves may be coated by natural organic matter that leaves them dispersed for longer period of time. For example, additions of negatively charged
humic and fulvic acids to positively charged mineral NPs in natural freshwater. Other components of water such as Ca2+ hugely affect surface charge. For changing the shape or surface chemistry detergents or surfactants were added to the water, for instance to wash away SWCNTs, SDS were experimented. Ecotoxicology have been considering surface behaviour for a long time (Handy and Eddy 1991). The surface of the organism may present a complex unstirred layer (USL), which could result in shear forces that either cause particle aggregation (peri-kinetic aggregation, Handy et al. 2008). Such processes have already been implicated in TiO2 NP toxicity to trout (Federici et al. 2007). Solid–liquid and air–water interfaces in the environment may show similar properties that attract NPs to agglomerate on species, and act as transporter. Baun et al. (2008) recently showed that the uptake of phenanthrene by Daphnia magna was much faster in the presence of C60 NPs and was probably due to the NPs enabling delivery of the phenanthrene to the test organism.
Respiratory toxicology and inflammation reactions to NP exposure are important routes in the uptake of NPs and in relation to NPs impacts in ecotoxicology. Biochemical change and genotoxicity also require investigation in wildlife. There has been evidence of impacts on Ti particles hampering algae growth, but concentration of NPs on soil showed to have no impact. Moore (2006) also raised concerns about NPs acting as delivery vehicles for other chemicals via endocytosis pathways. Manufactured nanoparticles have not shown dispersion in water so far. For example, carbon nanotubes are almost impossible to disperse in water by physical methods such as sonication or stirring alone, and may require the use of a dispersing agent (e.g., Smith et al. 2007).
The main requirement is categorisation of NPs for the purposes of ecotoxicological risk assessments in analysis of products life cycle that would release NPs into the environment. We should recognise that the behaviour of NPs in the marine environment is likely to be very different from some freshwaters, and that a fundamental understanding of natural NPs and colloids may be a prerequisite to elucidating the fate and behaviour of manufactured NPs in complex environmental matrices. Ecotoxicologists therefore need to learn some physico-chemistry, and work more closely with physicists, chemists, and material scientists to achieve the correct interpretation of data from ecotoxicity experiments.

Handy R D et al, The ecotoxicology of nanoparticles and nanomaterials: current status, knowledge gaps, challenges, and future needs, Ecotoxicology Journal, 17:315-325, Springer, April 2008


Toxic potential of materials at nano-level

Although the extraordinary characteristics of NP may necessitate novel investigation approach to assess their hazard potential, particle toxicology is a mature science that addresses the mechanisms of lung injury by inhaled particles (4–6). Inhaled or instilled ambient ultrafine particles (particulate matter with an aerodynamic diameter G 100 nm) can induce pulmonary inflammation, oxidative stress, and distal organ involvement. In a similar fashion, occupational exposure to quartz, mineral dust particles (e.g., coal and silicates), and asbestos fibers induce oxidative injury, inflammation, fibrosis, cytotoxicity, and mediator release from lung target cells (4–8). The same holds true for experimental instillation of titanium dioxide (TiO2) and carbon black nanoparticles in animal lungs. Tissue and cell culture analysis support the physiological response seen in animal models, pointing to the role of oxidative stress in the production of inflammatory cytokines and cytotoxic cellular responses.

In addition to the paradigm of oxidative stress and inflammation, it is important to consider that some of the NM interactions depicted may also results in other forms of injury, such as protein denaturation, membrane damage, DNA damage, immune reactivity, and the formation of foreign body granulomas. It is also possible that new NM properties may emerge that can lead to novel mechanisms of toxicity.

Carbon nanotubes are long carbon-based tubes that can be either single- or multiwalled and have the potential to act as biopersistent fibers. Nanotubes have aspect ratios Q 100, with lengths of several mm and diameters of 0.7 to 1.5 nm for single-walled nanotubes (SWNT) and 2 to 50 nm for multiwalled nanotubes (MWNT). In vitro incubation of keratinocytes and bronchial epithelial cells with high doses of SWNT results in ROS generation, lipid peroxidation, oxidative stress, mitochondrial dysfunction, and changes in cell morphology (19).

The biological impacts of NM and the biokinetics of nanoparticles are dependent on size, chemical composition, surface structure, solubility, shape, and aggregation. These parameters can modify cellular uptake, protein binding, translocation from portal of entry to the target site, and the possibility of causing tissue injury (4).

Although inhalation is a less likely route for engineered NM exposure compared with ambient or mineral dust particles, this can happen during bulk manufacture and handling of freely dispersable nanoparticles. Inhaled nanoparticles are efficiently deposited by diffusional mechanisms in all regions of the lung (4).

It has been proposed that Radio-labeled ultrafine carbon black may translocate through the respiratory epithelial layer to reach the lung interstitium or the blood and lymph circulations, but this finding has been refuted by others (25, 26).

....the state of particle aggregation or dispersion is important in cellular interactions as exemplified by the finding that, if nanoparticles are coated with lung surfactant before cellular incubation, the cellular fate differs from that of uncoated particles. The assessment of nanomaterial inorganic and organic coatings and state of aggregation are therefore important considerations in evaluating NM toxicity.

.......However, given the unique characteristics of NM, this will necessitate new test strategies to delineate the novel mechanisms of injury that may arise from these materials. More refined approaches for NM characterization and toxicological evaluations will emerge with time, for example, use of nanosensors to detect ROS generation by nanoparticles. This could make these evaluations cost effective, facilitating new product development.

What type of NM testing should be performed? The National Toxicology Program (NTP) in the United States has been established as an interagency program to evaluate chemical agents that are of public health concern by implementing modern toxicology tools. [Other governmental agencies, such as the Environmental Protection Agency (EPA) and the National Institute of Occupational Safety and Health (NIOSH) also have important roles in assessing nanomaterial safety in the United States, which will not be discussed here]. Although it is still questionable whether NM should be treated as commercial or industrial chemicals, the preferred NTP approach to chemical toxicity is a predictive scientific model that focuses on target-specific, mechanism-based biological observations, rather than a descriptive approach.

...among the 80,000 chemicals that are currently registered for commercial use in the United States, only 530 have undergone long-term and 70 short-term testing by the
NTP. Moreover, the resource-intensive nature of these studies puts the cost of each bioassay at $2 to $4 million and takes over 3 years to complete.

Much can be learned from research into the adverse health effects of ambient PM, where progress was slow until major mechanistic hypotheses were introduced. Armed with the knowledge that particle size, surface area, and chemical composition are important for ROS generation as a key toxicity principal, it has become
easier to design in vivo studies in at-risk populations (8). The extent to which this or other paradigms of injury (Table 2) apply to a wide range of NM needs to be determined.

Although it is not possible to provide detailedprotocols for nanotoxicity testing here, it will suffice to mention that the three key elements of a toxicity screening strategy should include physicochemical characterization of NM, in vitro assays (cellular and noncellular), and in vivo studies (40). There is a strong likelihood that biological activity will depend on physicochemical characteristics that are not usually considered in toxicity screening studies. Thus, any test paradigm must attempt to characterize the test material with respect to size (surface area, size
distribution), chemical composition (purity, crystallinity, electronic properties, etc.), surface structure (surface reactivity, surface groups, inorganic/organic coatings, etc.), solubility, shape and aggregation. This should be done at the time of NM administration as well as at the conclusion, if possible. It is beyond the scope of this paper to discuss the scientific methods for NM characterization except to comment that standard reference materials (e.g., TiO2, carbon black, quartz) are essential to compare material behavior. Cellular assays should reflect portal-of-entry toxicity in lungs, skin, and mucus membranes as well as noxious effects on target tissue such as endothelium, blood cell elements, spleen, liver, nervous system, heart, and kidney. Noncellular assays could include protein interactions and
pro-oxidant activity. The in vivo studies can make use of disease-specific animal models that assess portal of entry and target organ injury, as well as animal models in which live imaging can be used to show the activation of oxidative stress and redox signaling pathways that are involved in particle-induced tissue injury. When
in vivo toxicity is observed, it may also be appropriate to proceed with studies that formerly assess the absorption, distribution, metabolism, and elimination of NM. Because NM have the potential to spread beyond the portal of entry, it is important to assess systemic responses. Examples include assays for oxidative stress (e.g., lipid peroxidation), C-reactive protein, immune and inflammatory responses, and cytotoxicity (e.g., release of liver enzymes and glial fibrillary acidic protein). The biological studies can be strengthened by the use of discovery tools such as proteomics and genomics to develop biomarkers for toxicity screening (12).

As testing proceeds, it will be important to incorporate these data into a knowledge base that allows investigators to classify NM as safe or possibly hazardous. Negative data should be reported to show which materials are devoid of
toxic effects. This could represent the majority of NM. Potential difficulties may be encountered in conducting in vitro and in vivo studies with engineered NM. These include problems with dosimetry, state of agglomeration (singlets versus aggregates), impact of material coating, and lack of knowledge of real-world exposures to NM. Detection methods need to be developed for exposure assessment and dosimetry calculation. Current state-of-the-art methods to detect airborne nanoparticles should enable personal monitoring devices to be developed to assess these exposures.

Andre Nel et al, Science 311, 622 (2006)


Cell Physiology

Treating cells with a cytotoxic compound can result in a variety of cell fates. The cells may undergo necrosis, in which they lose membrane integrity and die rapidly as a result of cell lysis. The cells can stop actively growing and dividing (a decrease in cell viability), or the cells can activate a genetic program of controlled cell death (apoptosis).

Cells undergoing necrosis typically exhibit rapid swelling, lose membrane integrity, shut down metabolism and release their contents into the environment. Cells that undergo rapid necrosis in vitro do not have sufficient time or energy to activate apoptotic machinery and will not express apoptotic markers.[1] Apoptosis is characterized by well defined cytological and molecular events including a change in the refractive index of the cell, cytoplasmic shrinkage, nuclear condensation and cleavage of DNA into regularly sized fragments.[2] Cells in culture that are undergoing apoptosis eventually undergo secondary necrosis. They will shut down metabolism, lose membrane integrity and lyse.[2][3]

[edit] Measuring Cytotoxicity

Cytotoxicity assays are widely used by the pharmaceutical industry to screen for cytotoxicity in compound libraries. Researchers can either look for cytotoxic compounds, if they are interested in developing a therapeutic that targets rapidly dividing cancer cells, for instance; or they can screen "hits" from initial high-throughput drug screens for unwanted cytotoxic effects before investing in their development as a pharmaceutical.

Assessing cell membrane integrity is one of the most common ways to measure cell viability and cytotoxic effects. Compounds that have cytotoxic effects often compromise cell membrane integrity. Vital dyes, such as trypan blue or propidium iodide are normally excluded from the inside of healthy cells; however, if the cell membrane has been compromised, they freely cross the membrane and stain intracellular components.[3] Alternatively, membrane integrity can be assessed by monitoring the passage of substances that are normally sequestered inside cells to the outside. One commonly measured molecule is lactate dehydrogenase (LDH).[4] Protease biomarkers have been identified that allow researchers to measure relative numbers of live and dead cells within the same cell population. The live-cell protease is only active in cells that have a healthy cell membrane, and loses activity once the cell is compromised and the protease is exposed to the external environment. The dead-cell protease cannot cross the cell membrane, and can only be measured in culture media after cells have lost their membrane integrity.[5]

Cytotoxicity can also be monitored using the MTT or MTS assay. This assay measures the reducing potential of the cell using a colorimetric reaction. Viable cells will reduce the MTS reagent to a colored formazan product. A similar redox-based assay has also been developed using the fluorescent dye, resazurin. In addition to using dyes to indicate the redox potential of cells in order to monitor their viability, researchers have developed assays that use ATP content as a marker of viability.[3] Such ATP-based assays include bioluminescent assays in which ATP is the limiting reagent for the luciferase reaction.[6]

Cytotoxicity can also be measured by the Sulforhodamine B (SRB) assay, WST assay and clonogenic assay.

Wikipedia

CNTs from natural resources - (Horseradish)



a) Photograph of the garnet sand used to produce nanotubes; the inset is an SEM image showing the average diameter of the sand particles (average size ca. 200 m). b-d) SEM images of the CNTs grown on the surface of the garnet sand particle (in parts b and c, G and T indicate the garnet particle and CNT, respectively; part d corresponds to the CNTs only). e, f) TEM images showing the central hollow core of a typical as-grown CNT (e) and the highly linear and crystalline lattice of the wall (f).

http://www3.interscience.wiley.com/aboutus/hottopics/suschem/

Interscience, Vol 1, issue 10, 2008



PITTSBURGH-University of Pittsburgh researchers have developed the first natural, nontoxic method for biodegrading carbon nanotubes, a finding that could help diminish the environmental and health concerns that mar the otherwise bright prospects of the super-strong materials commonly used in products, from electronics to plastics.

A Pitt research team has found that carbon nanotubes deteriorate when exposed to the natural enzyme horseradish peroxidase (HRP), according to a report published recently in “Nano Letters” coauthored by Alexander Star, an assistant professor of chemistry in Pitt's School of Arts and Sciences, and Valerian Kagan, a professor and vice chair of the Department of Environmental and Occupational Health in Pitt's Graduate School of Public Health. These results open the door to further development of safe and natural methods-with HRP or other enzymes-of cleaning up carbon nanotube spills in the environment and the industrial or laboratory setting.

Carbon nanotubes are one-atom thick rolls of graphite 100,000 times smaller than a human hair yet stronger than steel and excellent conductors of electricity and heat. They reinforce plastics, ceramics, or concrete; conduct electricity in electronics or energy-conversion devices; and are sensitive chemical sensors, Star said. (Star created an early-detection device for asthma attacks wherein carbon nanotubes detect minute amounts of nitric oxide preceding an attack. See link below.)

“The many applications of nanotubes have resulted in greater production of them, but their toxicity remains controversial,” Star said. “Accidental spills of nanotubes are inevitable during their production, and the massive use of nanotube-based materials could lead to increased environmental pollution. We have demonstrated a nontoxic approach to successfully degrade carbon nanotubes in environmentally relevant conditions.”

The team's work focused on nanotubes in their raw form as a fine, graphite-like powder, Kagan explained. In this form, nanotubes have caused severe lung inflammation in lab tests. Although small, nanotubes contain thousands of atoms on their surface that could react with the human body in unknown ways, Kagan said. Both he and Star are associated with a three-year-old Pitt initiative to investigate nanotoxicology.

“Nanomaterials aren't completely understood. Industries use nanotubes because they're unique-they are strong, they can be used as semiconductors. But do these features present unknown health risks? The field of nanotoxicology is developing to find out,” Kagan said. “Studies have shown that they can be dangerous. We wanted to develop a method for safely neutralizing these very small materials should they contaminate the natural or working environment.”

To break down the nanotubes, the team exposed them to a solution of HRP and a low concentration of hydrogen peroxide at 4 degrees Celcius (39 degrees Fahrenheit) for 12 weeks. Once fully developed, this method could be administered as easily as chemical clean-ups in today's labs, Kagan and Star said.

http://www.news.pitt.edu/m/FMPro?-db=ma&-lay=a&-format=d.html&id=3552&-Find

Monday, November 17, 2008

Tunnelling electrons nano-motor





Nature contains a wide range of nanomotors — for example, some bacteria and other tiny organisms propel themselves using whip-like structures that are driven by biomolecular motors. Not surprisingly, researchers are looking at such “biomotors” for inspiration.

Powered by tunneling electrons
The quantum-mechanical tunnelling of protons is believed to be at the heart of some biomotors, and now Petr Král and colleagues that the University of Illinois at Chicago have shown that electron tunnelling could be used to drive manmade nanomotors.

The team used molecular-dynamics computer simulations to model nanomotors that comprise a carbon nanotube shaft with molecular "stalks" terminated by conducting "blades" (see figure). The rotor resembles a water wheel, except that one electron at a time tunnels between stationary electrodes and moving blades.

With each electron passing through the blades, the device rotates by either 120° or 60° — depending on how the blades are configured. Rotation occurs because the net effect of charging and discharging the blades nearest to the electrodes creates an electrode dipole moment across the rotor. This dipole is subject to the electric field created by the two oppositely-charged electrodes and the resulting torque drives the rotor.

http://nanotechweb.org/cws/article/tech/36611;jsessionid=AA00ABFFF75D0344F557B783FEEEF543

Sunday, November 16, 2008

Calcium: Cell biology

CELL BIOLOGY


It's a bit like talking to your neighbor at a dinner party with a megaphone, but Tovey et al. report that the stimulation of calcium release through inositol 1,4,5-trisphosphate receptors (IP3R) results from enormous amounts (1000 times greater than the amount needed to activate protein kinase A) of the second messenger cAMP produced by adenylyl cyclase (AC) molecules that are closely apposed to the IP3R channel. The authors were led to this unorthodox interpretation by their exploration of the mechanisms by which parathyroid hormone (PTH), which itself does not cause the release of calcium, enhanced the effects of other hormones on the release via IP3Rs of calcium from internal stores. Only PTH analogs that activated AC potentiated calcium release. High concentrations of cAMP analogs were sufficient to reproduce the effects of PTH and were not additive with the effects of the hormone. The authors propose that AC and IP3Rs are in such close proximity that activation of the cyclase produces a massive all-or-none response of the channel that is resistant to modulation by agents that alter cytoplasmic concentrations of cAMP; immunoprecipitation experiments confirmed the prediction that IP3Rs and AC were associated physically. Such signaling complexes would have on-off or switchlike properties and could allow graded responses by recruitment of more activated complexes rather than graded response at an individual complex. To add to the complexity, the IP3R-associated isoform of AC is inhibited by calcium. Thus, localized concentrations of cAMP and calcium might oscillate as a result of feedback inhibition. -- LBR



Ray B, Journal Cell Biol. 183, 297 (2008)



The ANK3 protein has a role in the assembly of voltage-gated Na+ channels; CACNA1C encodes the alpha1c subunit of the L-type Ca2+ channel. Interestingly, Na+ channels are targets of the anticonvulsant drugs used to treat bipolar disorder.

..........What is the significance for neurobiology of these recent advances in neuropsychiatric genetics? Even variants that contribute a small increment of risk, as is likely to be the case for ANK3 and CACNA1C28, can point to pathways that might be involved in pathophysiology and can thus suggest biological hypotheses and possible drug targets. Where highly penetrant mutations can be identified, they can provide particularly powerful tools for neurobiology, as illustrated by the neurexin and neuroligin story or the investigations into fragile X syndrome and Rett syndrome that have produced animal models of treatment. There is, of course, still a long distance to travel in the identification of risk-conferring alleles, of which there will be many, and in the replication of association studies and demonstration of both statistical and biological significance. There is much challenging neurobiology to come, but it is biology that will ultimately have enormous significance for human health.

Hyman S, 2008, Nature, 455


VITAMINE D DILEMMA

Radiological health expert Daniel Hayes who works at the New York City Department of Health and Mental Hygiene recent published on the subject of low dose radiation and the possibility that a form of vitamin D could be the key to protecting us from background radiation and perhaps save lives following a nuclear incident or terrorist attack involving a so-called dirty bomb.

Hayes explains that calcitriol, the active form of vitamin D, could be the oral agent, that medics have been searching for to provide a quick, simple, and inexpensive way to protect us when the warning sirens sound.

Having spoken to various researchers with markedly different views on vitamin D, its benefits and its its potentially detrimental effects on health, I wasn’t too sure about how adding yet another dietary supplement to our daily intake would be beneficial. I asked Hayes to expand.

“One should get vitamin D3 either from solar irradiation of the skin or from dietary supplementation,” he told me, “I personally take 2000 IU daily which is obtained without a physician’s prescription…2000 IU is definitely safe, I can dig up the documentation.”

http://www.sciencebase.com/science-blog/vitamin-d-dilemma.html




Glucosamine for knee osteoarthritis – what's new?
Relevant BNF section: 10.1.5

Glucosamine is a natural substance that has been widely used for several years as a food supplement to treat people with osteoarthritis.1 One formulation of {blacktriangledown}glucosamine hydrochloride (Alateris – Ransom) has recently become the first (and is currently the only) glucosamine product to be licensed as a medicine in the UK for symptomatic relief of mild to moderate osteoarthritis of the knee. In 2002, we concluded that unlicensed "oral glucosamine sulphate 1,500 mg [daily] probably provides modest symptom relief in patients with osteoarthritis of the knee and its efficacy appears similar to that of NSAIDs".1 Here we update our advice in the light of new evidence and assess the place of the licensed glucosamine hydrochloride tablets.

http://www.dtb.bmj.com/cgi/content/abstract/46/11/81

Saturday, November 15, 2008

Cladogram





About the ToL Navigation Picture

We've been getting a lot of inquiries about the tree of life picture on our home page. It is important to note that the major function of this picture is to help visitors to the ToL web site to quickly navigate to pages of some of the major groups of organisms. In order to serve this purpose, we had to use a greatly simplified representation of the tree of life.
http://tolweb.org/tree/home.pages/aboutoverview.html





Dennis Wall's Phylomonography

Dennis P. Wall presents his dissertation work on mosses in a novel way, using technology to reflect his philosophy of phylogenetics and to present the supporting evidence, including pictures of characters and a distribution map of specimen locations. This representation is similar to a standard tree diagram structure, but leverages interactivity to compress the display and also provide access to supporting information.







UCMP's Evolution website for teachers

The new teacher's resource website on evolution, evolution.berkeley.edu, presents a simple visualization of our place in the tree of life. Shown in-the-round, the tree emphasizes the three domains of life, replacing earlier ideas of "kingdoms." This representation uses attractive images and colors, labels branches at a resolution that will be digestable by most viewers, giving branches proportional space, and displays time/evolutionary distance by radiating out from the center of a circle.


http://www.rebeccashapley.com/cipres/gallery.htm

Pylogeny of complete genomes

A phylogeny of complete genomes: data repository



http://www.bork.embl.de/tree_of_life/

Thursday, November 13, 2008

Most true it is that I have look’d on truth Askance and strangely….. Shakespeare

Orienting Collagen Nanofibers

A Study of the Formation of Collagen Nanofibers using Electrospinning", at the School of Industrial and Aeronautic Engineering of Terrassa, reports on the manufacturing of synthetic cartilage similar to human cartilage, for medical use. Protection of the knee for disabled people with prostheses may be one of the first applications. controlling nanofibers means arraying them in a particular configuration: in parallel, in a circle, or crossed. The fibers that form the cartilage that protects the knee are aligned in parallel. Orienting collagen nanofibers is an extremely complex task because collagen is a natural polymer that is very difficult to control. This task was achieved by using the electrospinning method.

The results of this work are innovative. The collagen nanofibers are obtained by exposing the collagen to electrical discharges. The collagen is extruded, in the form of a nanofiber thread, through a fine needle and is deposited on an electric collector consisting of two grounded plates. The student placed a nonconductive material between the two conducting plates. The nanofibers aligned on top of each other perfectly in parallel lines between the two conducting plates.

The student was very cautious when explaining why the nanofibers had behaved in this manner. One hypothesis that was explained the phe-nomenon has to do with the ratio of the diameter of the nanofibers to the distance between the two collecting plates on which they are deposited. she believes that the smaller the diameter of the nanofibers, the better the results will be, but she insists that this is a working hypothesis that needs to be thoroughly tested.

How to manufacture synthetic cartilage
Until now, creating synthetic cartilage was complex but not impossible. The prob-lem was that it was impossible to imitate the perfection of human cartilage due to the difficulty in orienting the collagen nanofibers; synthetic cartilage was there-fore manufactured using gelatinous substances derived from collagen.

The process for creating synthetic cartilage began with processing stem cells. These cells, if processed in the right way, reproduce and transform into any type of cell required by the scientist manipulating them. For this to be possible, the cells must be in an ideal environment. This work means that the collagen fibers adapt to the configuration of the chondrocytes (cartilage cells) and are made in the ideal environment, in which these chondrocytes grow until they form the desired cartilage.

http://www.azonano.com/news.asp?newsID=8656

Electro spinning of Nano fibre

Simple core nano fibres synthesis process is established. (Single nozzle systems)

Core-Multi-shell Nanofibres will lead to:

Biosensors
In-vivo CMOS implants
Drug delivery
Gas Sensors
Tissue Engineering
High strength materials
Hydrogen Storage

Mark

Ergonomics: Melatonin rhythm

Quite often, the lighting conditions in artificially illuminated windowless workplaces do not meet the ergonomical standards. In this context, low lighting intensities not only debilitate the employees vision but irritate the non-visual aspects of light as well, i.e. they impair the subject’s regular circadian rhythm of melatonin and other parameters. An insufficient suppression of daytime melatonin synthesis extends its sphere of action. The biological effects of melatonin include the timing of core body temperature, the setup of diurnal cortisol rhythms, and the promotion of sleep (Arendt and Skene, 2005; Lewy et al., 1992; Zhdanova, 2005).

Thus, one ergonomical concern in the strategy of workplace illuminationshould be to allow for an adjustment of a regular daytime melatonin rhythm. This will help to avoid the risks of on-the-job sleepiness, decreased alertness, and reduced job performance. In our study, highest aMT6-s concentrations could be detected in urine samples collected at the beginning of the experimental office work at 09:00 a.m. In the course of the day, there was a significant drop in aMT6-s levels with lowest values at 05:00 p.m. This is in congruence with the circadian profile reported for melatonin in the literature and is regarded to be due to bright light exposure (Lewy et al., 1980; Lynch et al., 1975).

Effects of variable lighting intensities and colour temperatures on sulphatoxymelatonin and subjective mood in an experimental office workplace, Applied Ergonomics Journal, Nov 2007, Elsevier Publishing





"In the bluish light scenario, a significant improvement in restless behaviour was observed in the intervention group, as well as a significant increase in the range of tympanic temperature. These effects were not found in the yellowish light scenario. Further evidence is found that high-intensity bluish light may play a role in managing restless behaviour and improving circadian rhythmicity in institutionalised older adults with dementia."

Ambient bright light in dementia: Effects on behaviour and circadian rhythmicity , Building and Environment, Vol 44, 2008


CRAIG VENTER, Ocean gene sequencing

Wednesday, November 12, 2008

For generations of products and processes: Nano

“… for I was never so small as this before, never!”
Lewis Carroll, Alice in Wonderland, 1907


FOR GENERATIONS OF PRODUCTS AND PROCESSES

1st passive nanostructures (1st generation products)
a. Dispersed and contact nanstructures Ex: aerosols, colloids
b. Products incorporating nanostructures Ex: coatings; nanoparticle reinforced composites; nanostructured metals, polymers, ceramics


2nd Active nanostructures
a. Bio-active, health effects Ex: targeted drugs, biodevices
b. Physio-chemical active Ex: 3D transistors, amplifiers, actuators. adaptive structures d Active nanostructures

3rd Systems of nanostructures
Ex: guided assembling; 3D networking and new hierarchial architectures, robotics, evolutionary biosystems

4th Molecular nanosystems
Ex: molecular devices ‘by design’, atomic design, emerging functions

A key issue in understanding the system of innovation in nanomaterials is that the great majority of nanomaterials are not consumer products to be sold to an end user, but ‘capital’ materials to be used by other industries in order to make new products. In this sense most nanomaterials can be understood as ‘products for process innovation’. This is why supplier and manufacturing firms occupy the central position in nanoma-terials innovation systems. The innovation system for nanomaterials can therefore be conceptualised as an ‘hourglass model’ (figure 2-VI) in which a variety of scientific disciplines support the development of a number of technologies for the fabrication of nanomaterials, which then serve many different economic sectors.

Novel Materials in the Environment: the case of nanotechnology, Royal Commission on Envir Pollution, Nov 2008

Tuesday, November 11, 2008

Defect in ionic solids




































Real crystals are imperfect. Every lattice site is not occupied. There can be a vacancy at a site called a Schottky defect created by moving an atom from its lattice site in the interior to the surface of the crystal. Another kind of defect is a Frenkel defect, in which an anion is transferred from its site to an interstitial position. The number of Schottky vacancies present is dependent on the temperature. It can be shown form statistical mechanics that the fraction of sites f vacant at a given temperature is proportional to

F = exp – E / k T

Where E is the defect formation energy, that is, the energy needed to move an atom from its lattice site to t he exterior of the crystal. The question we are interested in examining is how nanosizing affects the fraction of defects in the material, which means that we have to examine the effect of nanosizing on the defect formation energy. For a crystal consisting of nonpolarizable constituents, the defect formation energy is the lattice energy per atom U. in the case of ionic solids U is an overestimate of the defect formation energy because it neglects the polarization energy produced by the vacancy. when an ion is removed from its site, the ions around the site experience an electric field and are polarized. The potential ϕ from t his polarization must be included I determining the defect formation energy, which is then

E = U – e ϕ / 2

We consider simple model for the potential ϕ. When a positive ion is removed from its site, the neighbouring ions experience and electric filed e/r^2, where r is the distance of the ion from the vacancy. the neighbouring ions become polarized having a dipole

μ + = a + e/ r^2 for positive ions and μ- = a – e/r^2 for negative ions,

where a is the polarizability of the ion, which will differ between Na+ ions and Cl- ions. The potential produced by a dipole is proportional to μ /r2 and depends on the orientation of the dipole. Thus the induced dipole on the ions produces a potential ϕ at the vacancy given by

ϕ = ∑ a+e /r j^ 4 + ∑ a- e/ r k ^4

where rj is the distance of positive ions from the vacancy and rk is the distance of negative ions form the vacancy.

to illustrate the effect of nanosizing on the energy to form a vacancy, let us calculate the defect formation energy to remove a positive ion in the middle of our linear NaCl lattice discussed above. The energy will be e ϕ /2. because the l / r^4 term decreases rapidly with r at most, we need only go to next nearest neighbours in the summation to calculate the polarization contribution to the formation energy. In this case the energy will be

E = 2a + e / R^4 [ ½^4 ¼^4] + 2 a = e ^2 / R^4 [ 1 + 1/3 ^4]

Frank Owen, Charles Poole, The physics and Chemistry of Nanosolids, Wiley, 2008

Sunday, November 09, 2008

Determinism



....the irritation and unease that determinism can conjure in relation to the effort and commitment that we put into life. The emotional question is, “can I be bothered?”; can I be bothered to employ my higher faculties in earnest, or shall I simply recline in apathy? This more emotional question inevitably is concerned with emotional factors such as how wearying or how inspiring is the employment of these higher faculties, how stubborn or determined is our nature, and countless other human influences. It is not necessary to reconcile determinism and the concept of free will in order to appreciate that the argument that we might as well just relax because atoms will carry on colliding in a pre-determined way regardless of our effort, is clearly a sloppy one.

Robinson C P, comments - In our time!


......the issue of the distinction between subjective awareness and objective awareness when discussing consciousness. This is the heart of the problem that consciousness poses for materialism. Science understandably focuses on objectifiable awareness since science is optimized to study what is distributed in space and time and ultimately that is what we mean by objectifiable. Also objective awareness correlates strongly with the sensory mechanisms that enable our interaction with the space-time environment and these are easily studied by science. Subjective awareness however, cannot be understood by our present system of science and mathematics, not simply because we are trying to understand a complicated system, but because it has all the hallmarks of behaving as a singularity.

comments



I now realize why I sensed something was going wrong nanotech enthusiasms with the regulation pressure – as I began to review social issues of the past when science saw drastic discoveries. Social aspects of nanotechnology are essential part of the response to ethical issues of how far we can push such enabling sci-ence. The whole idea of free thinking is important before an era of revolutionary time of nanoscience unfolds itself in the minds of practitioners! We must learn how these particles affect us and are translated into thoughts by free endeavours to drive all the ideas to consequences.
What is particularity of nanoworld is increasing extension of surfaces! We are certainly much richer in the context of a nano-defined world as we have greatly extended the surfaces. Gassendi is the one philosopher that is needed mentioning for his ideas on surfaces, since he stresses that in response to Descartes on Mate-rialism - he says the question is all about measuring surfaces and tend to move away from the idea of the soul. However, according to William Blake the idea that we are only made out of particles, has left out huge amount of nature and beauty, and that our rich repertoire is indispensable.

Risk assessment: nanotechnology

Where to draw a line: locating the risk

The unpredictable future of nano technology is challenging, for uncertainties but also immense opportunities. By all estimates scientific research programmes at large scale are outlined or influenced by funding bodies. Nanoscience, especially for the requirement of sophisticated probing tools and expertise, follows the same path. One particular feature in nanotechnology is multidisciplinary aspect, with additional dependence on sharing the results and collective engagement, which require collaboration of scientists with diverse speciality working on a single research question. This is due to myriad possibilities that are open and need probing. The comparative advantage of nanoscience to create novel solutions for human problems will thrive providing supportive environment for extensive research, connectivity and creativity is not disturbed.

On the other hand, since nanotechnology is relevant to all issues of concern such as climate change, environmental toxicity, pandemics, ageing population, energy, etc. – that are at risk of terrorist or other criminal activities, comprehensive guidelines should be in order to regulate and standardize the “commercialisation” of any nano-tech product "prior" to mass production and marketing. That is the "cutting point" where extreme checks and balances need to be established. Unwanted consequences of the new technology – abuse in mal-intention schemes - may be immense and far reaching with greater global impacts, which require collective action, and international executive branch – perhaps at the level of metropolitan police. Therefore, regulatory clauses need to be highly technical, all inclusive and informed by scientific and political bodies but also need to envisage proper executive power overseeing national politics – to act far more effective than eg. UN in risky countries. In this sense, perhaps an international regulatory regime must be defined to make best estimate of risks that may spread out internationally between countries, and across the globe.

The hope is that before film companies make huge profits out of banal horror scenarios, some extraordinary beneficial applications go public in order to do away with the hype and restore people’s trust in this novel path to enhance human capabilities.thoughtful


Nasrin


Ref:


Goldin I, 21 Century James Martin School, The future of humanity, Oxford Univ, public seminar podcast, Sept 2008

Schmidt, Project on Emerging Nanotechlogoies, Woodrow Wilson International Center for Scholars, www.nanotechproject.org
http://www.newscientist.com/article/mg20026814.000?DCMP=NLC-nletter&nsref=mg20026814.000
http://unesdoc.unesco.org/images/0014/001459/145951e.pdf

Saturday, November 08, 2008

Gold Nanoshells







Gold nanoshells consist of a dielectric core nanoparticle surrounded by a thin metal shell. By varying the relative dimensions of the core and shell constituents, one can design particles to either absorb or scatter light over the visible and much of the infrared regions of the electromagnetic spectrum. (A) These vials contain suspensions of either gold colloid (far left with its characteristic red color) or gold nanoshells with varying core:shell dimensions. (B) The optical properties of nanoshells are predicted by Mie scattering theory. For a core of a given size, forming thinner shells pushes the optical resonance to longer wavelengths.


ENGINEERED NANOMATERIALS FOR BIOPHOTONICS APPLICATIONS: Improving Sensing, Imaging, and Therapeutics, Annual Review of Biomedical Engineering, 2003